PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018422.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 361aa    MW: 39941.3 Da    PI: 9.582
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018422.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.79.6e-2155145186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  +W+++e+ aLi+ +re++ +lrrg+lk+++W++v++++     +    ++++qC++k+e+l+kry+ + +++++   s+ +s++++f++++
  Pbr018422.1  55 CWSHDETVALIDSYREKWYSLRRGNLKATHWQDVADAVarrcPAASPAKTAVQCRHKMEKLRKRYRTEIQRARSMpLSRFTSSWVHFKRMD 145
                  8********************************9999965556667789*************************977999**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2154147No hitNo description
SMARTSM005953.5E-1063152IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MASPPSSPQD DSILPLQSDP PQAVPLALPA PPLTLSQQTQ PNPTPPSSRR LPPPCWSHDE  60
TVALIDSYRE KWYSLRRGNL KATHWQDVAD AVARRCPAAS PAKTAVQCRH KMEKLRKRYR  120
TEIQRARSMP LSRFTSSWVH FKRMDTMEKG PAAGKRENSE SPGEEEENEE NEEEEDPDQE  180
LYEELRYGSN MKSMSKLYRN GVGVGGGSGG GAGAGSGFRI RIPTGVSIAQ PGTKVYPKMD  240
QKFGMNSNPG LNSGSVYGSA KVMRESGNSG RPGLGKRERD GGERDPVAEM VSAIKLLGDG  300
FVRMEQMKME MAREIEAMRM EMEMKRTEMI LDSQQRIVEA FAKAVSEKKK KAKRMPSPEA  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018422.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375369.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A498JES20.0A0A498JES2_MALDO; Uncharacterized protein
STRINGXP_009375369.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.18e-66Trihelix family protein