PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018624.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 280aa    MW: 30528 Da    PI: 4.8212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018624.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-194089255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Pbr018624.1 40 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 89
                 678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.35E-313996No hitNo description
PROSITE profilePS5103220.7054097IPR001471AP2/ERF domain
SMARTSM003806.6E-3540103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-294197IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-214198IPR016177DNA-binding domain
PfamPF008474.1E-124189IPR001471AP2/ERF domain
PRINTSPR003673.5E-84152IPR001471AP2/ERF domain
PRINTSPR003673.5E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDFFTASPSK SNNSPSSSSK TKRKQQQQQT QQPQTQQETR FLGVRRRPWG RYAAEIRDPS  60
TKERHWLGTF DTAEEAALAY DRAARSMRGS KARTNFVYSD MPHGSSVTSI ISPDESQRDM  120
SAFFTNPLPE THSQSQTHTQ QPFFTHQDPF DAYTVSGGSS TEFGSGSYGP TPGVVADESG  180
YQSESHTHEL PPLPPCVSSS TCYGPEGIMS SDGVWNESGF YGFSEPTTNN GLDSMVSGSY  240
VGFDSNEFVQ HSPLFGSMPP VSDAGIDGFD LGSSSAYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-204196359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353495.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9FZ902e-51ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A498HP731e-145A0A498HP73_MALDO; Uncharacterized protein
STRINGXP_009353495.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]