PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018668.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 329aa MW: 36554.2 Da PI: 7.9535

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018668.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	57	79	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C C ++F +k +++H++ H Pbr018668.1 57 VCRLCFRRFGTKKAFQVHQKDnH 79 7******************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	58	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGGVCLLLRY LDSQMVCEAG LSLEAAPAAR TLVVVMVVVL LMNLKGFIGA KAFENLVCRL 60 CFRRFGTKKA FQVHQKDNHQ DCGKSSSCKC CFKTKSDFTD HLTIQGLPCH LYFDLEFSRR 120 DNADRNGDEM VDLLISAIFE ALLEKYSIIG NKEWILELDS SNEAKFSRHL IIRIEKTAFK 180 DNSHAGAFVT ETCSRISSAK ERDGRFGNLF IRKDSSSSDS PSKLFVDTAV YTRNRCFCLA 240 LSSKAGKNSV LLPTGRFKAN RMGEEEMFMA SLICNLDVGC EKLLLCKPDL DCIRALHFDT 300 EVNRGLGKCY SWPQEYALNG CTSGASAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5l2x_A	8e-21	109	288	109	348	DNA-directed primase/polymerase protein
5l2x_B	8e-21	109	288	109	348	DNA-directed primase/polymerase protein
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018668.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008362791.1	1e-145	DNA-directed primase/polymerase protein isoform X2
TrEMBL	A0A251QNN2	1e-132	A0A251QNN2_PRUPE; Uncharacterized protein
TrEMBL	M5XLZ6	1e-132	M5XLZ6_PRUPE; Uncharacterized protein
STRING	XP_008362790.1	1e-143	(Malus domestica)