PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018783.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 369aa    MW: 40953.9 Da    PI: 9.8747
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018783.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI +         +R+  ++k++w++
      Pbr018783.1  5 KQKWTPEEESALKAGVIKHGAGKWRTILKDPEfsgvlYTRSNVDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.343158IPR017930Myb domain
SuperFamilySSF466891.05E-15267IPR009057Homeodomain-like
SMARTSM007175.7E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-14556IPR009057Homeodomain-like
PfamPF002493.1E-9555IPR001005SANT/Myb domain
CDDcd116601.92E-19656No hitNo description
SMARTSM005266.9E-11118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.47E-15119197IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.243120188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.1E-13121189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.2E-7125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGAPKQKWTP EEESALKAGV IKHGAGKWRT ILKDPEFSGV LYTRSNVDLK DKWRNMSVMA  60
NGWGSREKAK TALRRMHPIS KQDENSMPLS TVVQSDDEMM DAKPISVSSE TQQISGPRKS  120
IVRLDNLIME AITRLKEPGG SNKTTIAAYI EDEYWPPQDF KRLLSEKLKF LTASRKLIKV  180
KRRYRIAPTP ALSEKRRNTS TYPFEGRQVA SAFEGRRMAS PFEGRPLVSP FEGRYMASPK  240
FHNDEATILM KAQIDLELAK MRTMTPREAT LAAAQAVKEA EAAIAEAEEA AREAEAAEAD  300
AEAAQAFAEA AMKTLKGRNA AKTIEAEAAV IFIFEGDFCY PPRSALPCAF RVGSFLLTRG  360
QRAYAVID*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018783.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375661.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009375662.10.0PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-94TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A498IYQ10.0A0A498IYQ1_MALDO; Uncharacterized protein
STRINGXP_009375661.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-94telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]