PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018829.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22136.3 Da    PI: 8.5063
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018829.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.32.4e-19342241
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                  ie++  rqv+fskRr  ++KKA+EL+++C+++v+++ifs
  Pbr018829.1  3 LIESQHARQVSFSKRRSSLFKKASELCTMCAVQVLLVIFS 42
                 59*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.22E-21177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.815154IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-13153IPR002100Transcription factor, MADS-box
PfamPF003192.8E-19450IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-51631IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-53152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MELIESQHAR QVSFSKRRSS LFKKASELCT MCAVQVLLVI FSLGRKPFSF GYPSVHSVLN  60
RFHQFQNPDA STSQSEATKE PVMQGLNDSF SHLLEQVKFE QKRGKQLNRK IMEHSGPDWL  120
KAPMDSLNLE ELRKVKETLV DVKKKIKKQR DELLAEPLAS SANNSIELAH CPETNLVGDI  180
SSVHPQGSLT FREEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018829.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375893.11e-142PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A314YUF03e-53A0A314YUF0_PRUYE; Agamous-like MADS-box protein AGL61
STRINGXP_009375893.11e-142(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2040945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-20AGAMOUS-like 29