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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pbr018923.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 680aa MW: 77319.2 Da PI: 6.588 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 382.6 | 4.8e-117 | 307 | 677 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
+lL++cA+a +s d++ a+++L+++++++sp+gd+++Rla+yf+ +L+arl++ + y+ l + +t+ +e l+a++++++ +P+ + h+ N+
Pbr018923.1 307 TLLTQCAQATASYDQRSASEVLKQIRKHSSPSGDATERLAHYFADGLEARLVGARTPSYSPLLSIQTP---AAEILKAHQMYVNYCPFKYMLHFFSNR 401
79***************************************************999999999888888...89************************* PP
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
+I + +e+++r+Hi+Df+is+G+QWp+L+q L++R++gpps+R+T+++ p++g +e++eetg+rL+k+A++++v+fe++v a+++e+++le+L++
Pbr018923.1 402 TIIKLAEKATRLHIVDFGISYGFQWPCLIQRLSERNGGPPSIRLTAIELPQPGfrPTERVEETGRRLKKYAARFNVQFEYKV-FAQKWETIQLEDLKI 498
****************************************************9****************************9.7************** PP
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
+++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++ + +ns+ F++rf eal+++sa+fd++ea++pre+e+r++ E+++ g++i
Pbr018923.1 499 DRNELTVVNCMHRLKHIPDETVVVSSPRDLVLKLIRRINPDLFIHGVVNGTYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRMMFEKAIYGKDI 596
************************************************************************************************** PP
GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
+nvvaceg er+er et+++W+ r ++aGFk+vpl+++ k +k +l+ ++ d +r++e+ +++++gWk+r ++ + +W+
Pbr018923.1 597 MNVVACEGLERVERPETYKQWQVRYHRAGFKQVPLDQELLKRVKIMLKAMHyHDDFRIDEDGDWMLQGWKGRIIFGLAFWK 677
***********************************************99998999*************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 65.434 | 279 | 656 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.7E-114 | 307 | 677 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 680 aa Download sequence Send to blast |
MDTLFERFSS PMKNFQFGST QFQVNHEPTN PLFLPTTPEH PTDSGFSNPG SDGDSFDMSD 60 YNHSVIKYIS DILLEEDLED KPCMLQNCLA LQAAEKSFYD VLNPKDPPSP DQPPHPVYQS 120 FEHSDDDSSQ SYSSNDSMAA KADSVFDSSE TLLVSNSTSG NFGGVGEAGN LVPNLKHGII 180 DLQRYQLVPP GDNTLGRNSA PEPENDGYIS ANRLKGKKNH QREDGDYADG GRSNKQSAAL 240 GDDTEPQEMF DRVLLCHVNH THASCIRDKP LSSEGSEKLQ PKKQSKGSKT TRLKKQNNYQ 300 EVVDISTLLT QCAQATASYD QRSASEVLKQ IRKHSSPSGD ATERLAHYFA DGLEARLVGA 360 RTPSYSPLLS IQTPAAEILK AHQMYVNYCP FKYMLHFFSN RTIIKLAEKA TRLHIVDFGI 420 SYGFQWPCLI QRLSERNGGP PSIRLTAIEL PQPGFRPTER VEETGRRLKK YAARFNVQFE 480 YKVFAQKWET IQLEDLKIDR NELTVVNCMH RLKHIPDETV VVSSPRDLVL KLIRRINPDL 540 FIHGVVNGTY NSPFFVTRFK EALYHFSAMF DMFEATIPRE DEQRMMFEKA IYGKDIMNVV 600 ACEGLERVER PETYKQWQVR YHRAGFKQVP LDQELLKRVK IMLKAMHYHD DFRIDEDGDW 660 MLQGWKGRII FGLAFWKPA* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 2e-46 | 287 | 678 | 1 | 380 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Pbr018923.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018507266.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
| TrEMBL | A0A498KAI2 | 0.0 | A0A498KAI2_MALDO; Uncharacterized protein | ||||
| STRING | XP_008359006.1 | 0.0 | (Malus domestica) | ||||
| STRING | XP_008384949.1 | 0.0 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF131 | 34 | 339 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G29060.1 | 0.0 | GRAS family protein | ||||




