PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018955.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 187aa    MW: 21028.3 Da    PI: 8.2876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018955.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-051941123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ Fs+   L  H++ H
  Pbr018955.1 19 YECNFCKRGFSNAQALGGHMNIH 41
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-71646No hitNo description
Gene3DG3DSA:3.30.160.601.5E-51745IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6141946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTSDDQQDEG ARKQAAKSYE CNFCKRGFSN AQALGGHMNI HRKDKAKLKQ VSSSNTVETK  60
HQHQQQQQKL LDIPKLPSSY SPILPTINSL QHDKPIGHDI DRSTPRAPWP WFLDEESDTT  120
IQQLPLFSQT PSHNKHHQNP GIPQVHGDQS ERSLQLSGSK LDLELRLGPE PQNSSSSTEN  180
TTRKFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018955.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3704930.0HM370493.1 Malus domestica zinc finger protein (SUP11) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375949.11e-137PREDICTED: transcriptional regulator TAC1-like
TrEMBLS4S3531e-121S4S353_MALDO; Zinc finger protein
STRINGXP_009375949.11e-136(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein