PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018978.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 839aa    MW: 91843.1 Da    PI: 8.1975
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018978.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-096556921954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Pbr018978.1 655 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 692
                  564459******************************87 PP
2BELL98.45.8e-32504572472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e q+kkakLl ++eeV +r kqy++q+q+v++sFe vagl sa+pY+ +Al+a+SrhFrcL + i++q+
  Pbr018978.1 504 EYQQKKAKLLYMQEEVSRRCKQYHQQMQMVVASFESVAGLSSATPYICMALNAVSRHFRCLTNSIKDQL 572
                  789***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-37403570IPR006563POX domain
PfamPF075263.0E-40408568IPR006563POX domain
PROSITE profilePS5007111.888633696IPR001356Homeobox domain
SMARTSM003891.2E-7636700IPR001356Homeobox domain
CDDcd000861.01E-10636697No hitNo description
SuperFamilySSF466891.92E-16638701IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-27639700IPR009057Homeodomain-like
PfamPF059204.0E-18653692IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MQVCASRFGC RQSSKLNSQT TVCGKVSTSS KRVPDKYSRH ESHVAQQSRR DKLRVHQTSS  60
PPHHLDNLAN NSGKLPLHPG LNPHIVQVRN VRNANLLYDP TMFSSEMLDF SINANAPLSA  120
HRITMACHDQ DLGAAQPAGE SQNFGNWRST LNPPQSLDWV NNYTSGYQDV VQSSLANSSA  180
DQISSHRVAQ KHLGGGAMHF SSPSLKYVNT LQDVVTSASQ GTQQDQLEMA SIVHQRIMEN  240
EFVRVPSYGN QSNTLRFNNA SNSWMDRQSI ENRHNWSSGG GGGLEFSTAN SVDEEMRTGM  300
SSDSNQQGLS LSLSSNPPSN KLPVAQLIGS QDLHASTDDD DDDHHHALKD LQNSKMGKSS  360
GGYLCSITKP SIISKACGKS HQDIVGNSST SAYRSTGPLG PFTGYATILK SSKFLKPAQQ  420
LLDEFCRVSD SKILKTCEAS ERMSGDVSAS ASVSISIEAG NATETEVVAK RNNSGASSST  480
FYGSTEISSD GGAASISSES FWPEYQQKKA KLLYMQEEVS RRCKQYHQQM QMVVASFESV  540
AGLSSATPYI CMALNAVSRH FRCLTNSIKD QLKHTRKALG EEYMSSSVTA AGTAGCCSKG  600
EKNFAKLKYM GLGFQKHNKS GGGSLVGFSE PQQHVWRPQR GLPERSVAIL RTWLFEHFLH  660
PYPTDTDKHM LATQTGLSRN QVSNWFINAR VRVWKPMVEE IHILETRGGS LETGQDPINK  720
DGNSANEGTS SRPNNDHQLS MNVMPDRQLK CLGDAEQRNQ DMKRSRLECQ VSSSMDGGLM  780
GFVQDQRGGF EAGGLGAVSL TLGLRHGVES AQQQQQLQQQ EDQLRRQLGG QMIRDYVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-15642699158Homeobox protein Meis1
4xrs_B4e-15642699158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018978.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376059.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_009376060.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A498KB130.0A0A498KB13_MALDO; Uncharacterized protein
STRINGXP_009376059.10.0(Pyrus x bretschneideri)
STRINGXP_009376060.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.17e-85BEL1-like homeodomain 8