PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019037.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 283aa    MW: 30872.7 Da    PI: 7.7966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019037.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023109131123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Pbr019037.1 109 FSCNYCQRKFYSSQALGGHQNAH 131
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-6106136No hitNo description
PROSITE profilePS5015711.427109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEPAKNYETN IFSLAEAPPC PNTPLQDPKE TKQKLRVEED EEEMKDQEKE KKPSIRIIDL  60
DASDSNSNRR FCFDNPELNL LECLETGSSE GTTTTTTPLV SDAAEPRVFS CNYCQRKFYS  120
SQALGGHQNA HKRERTLAKR GQRMLGSHIM ASAAGFGYPY CSSLASLPLH GGGAFRALDI  180
QAHSMIHKPS SMMSSSAIRF GGSYGHRTFG SRSLFDQQPA VGKLAAAAAK GVGGAGRFDM  240
AKSNMVSQSS EEIGKCWLGN DSRFKSGSDQ EEMKKLDLSL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019037.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350854.10.0PREDICTED: zinc finger protein 3-like
TrEMBLA0A498JC970.0A0A498JC97_MALDO; Uncharacterized protein
STRINGXP_009350854.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-40C2H2 family protein