PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019166.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 763aa    MW: 84822 Da    PI: 6.2754
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019166.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21109164156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Pbr019166.1 109 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 164
                  7999************************************************9877 PP
2START223.18.6e-702785012206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  + ++a++el k+a+a+ep+Wv+s+    e++n+de++++f  +        +s+ea+r++gvv+ +l +lv +++d++ qW+e+++    ka+t++vi
  Pbr019166.1 278 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEVPgnarpkRSIEASRETGVVFVDLLRLVHSFMDVN-QWKEMFPcmisKAATVDVI 374
                  56789***********************************87544999******************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  ++g      g++qlm+aelq+l+plvp R+++fvR+++ql+ ++w+ivdvS+d  ++   ++s+v+++++pSg++ie+ksngh+kvtwveh ++++++
  Pbr019166.1 375 NNGegdnrnGTVQLMFAELQMLTPLVPtREVYFVRCCKQLSPEQWAIVDVSIDKVEDSI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKST 471
                  *********************************************************87.9************************************* PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  ++ +++ +v+s+la+ga++wvatlq qce+
  Pbr019166.1 472 IQTMYHTIVNSSLAFGARHWVATLQLQCER 501
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-2395160IPR009057Homeodomain-like
SuperFamilySSF466898.55E-2199167IPR009057Homeodomain-like
PROSITE profilePS5007118.269106166IPR001356Homeobox domain
SMARTSM003891.5E-18108170IPR001356Homeobox domain
PfamPF000461.3E-18109164IPR001356Homeobox domain
CDDcd000865.82E-17113164No hitNo description
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PROSITE profilePS5084839.844268504IPR002913START domain
SuperFamilySSF559618.79E-36270501No hitNo description
CDDcd088752.04E-113272500No hitNo description
Gene3DG3DSA:3.30.530.203.9E-6275484IPR023393START-like domain
SMARTSM002347.2E-72277501IPR002913START domain
PfamPF018521.4E-56278501IPR002913START domain
SuperFamilySSF559611.0E-15530751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGEAAAA SREVEEGEEG SGGGGSTAVG  60
SVRRREDTAE ISSENSEPAR SRSEDEFDGE GEHDEDDADG DNKNKKKKRK KYHRHTTEQI  120
REMEALFKES PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKGEME  180
KLRDENKAMR EQINKSCCPN CGTATTSRDA TLTTEEQQLR IENARLKSEV EKLRAALVKY  240
PPGTSSPSCS AGQDQENRSS LDFYTGIFGI EKPRIMEIVN QAMEELKKMA TAGEPLWVRS  300
VETGREILNY DEYIKEFNIE VPGNARPKRS IEASRETGVV FVDLLRLVHS FMDVNQWKEM  360
FPCMISKAAT VDVINNGEGD NRNGTVQLMF AELQMLTPLV PTREVYFVRC CKQLSPEQWA  420
IVDVSIDKVE DSIDASLVKC RKRPSGCIIE DKSNGHCKVT WVEHLECQKS TIQTMYHTIV  480
NSSLAFGARH WVATLQLQCE RLVFYMATNV PMKDSTGVAT LAGRKSILKL AQRMTTSFCR  540
AIGASSYHTW TKISSKTGDD IRIASRKNLN DPGEPLGVIL CAVSSVWLPV SPHVLFDFLR  600
DETRRNEWDI MLNGGPAQTI ANLSKGQDRG NAVTIQSMKS KEKSMWILQD TCINSYESMV  660
VYAPVDITGM QSVMTGCAAS NIAILPSGFS ILPDGLESRP MVITSRQEDR SSEGGTLLTA  720
AFQVLTNSSP TAKLTMESVE SANTLISCTL RNIKTTLQCE DG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KKKKRK
2104110KKKKRKK
3106110KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019166.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353605.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A498J3X10.0A0A498J3X1_MALDO; Uncharacterized protein
TrEMBLM5WXG00.0M5WXG0_PRUPE; Uncharacterized protein
STRINGXP_009353605.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]