PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019240.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 671aa    MW: 74586.4 Da    PI: 9.5124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019240.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-101448338
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      W t+E++ll++av+++G+ +W+++a ++  +R+ +
      Pbr019240.1 14 TWGTWEELLLACAVHRFGTQSWDSVATELR-KRSSN 48
                     7*****************************.56543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.13E-41448No hitNo description
PfamPF002492.1E-91448IPR001005SANT/Myb domain
SMARTSM002973.0E-11107406IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.7E-15298423IPR001487Bromodomain
SuperFamilySSF473703.79E-17301410IPR001487Bromodomain
CDDcd043692.91E-13310401No hitNo description
PROSITE profilePS5001410.443322387IPR001487Bromodomain
PfamPF004391.3E-8323391IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MDKQANFSEK QTPTWGTWEE LLLACAVHRF GTQSWDSVAT ELRKRSSNLH LLTPHACNRK  60
FHDLRRRFND AVSAASDDDK SPILWLDQLR QRRLDELRLE LQRYDRSIVS LQSKVERLKE  120
VREQSLRETE KPVEKSDLEK TQEAEIKPAD VSPEKKDISV RDGRSFDESK TTDPKPEEPG  180
TGDADTGNGS EPDEPGEAAG EEIGTADKSS NPAVEDSCNG SSDSVAKEPA VMEAEKGNSR  240
ELRESVAESK GGEEGTKESR QSSSDVQSSA SLSRKAGEEP EPVGPEEHGE PDQEDQSPAM  300
KGVPVESQPL VDFLQILRSL KFASFFERRL HSQDYTKMIR QHVDFEVVQT RLEGGWYSRC  360
SRSLFFRDML LICNNAIVFF GKKSPEYKAA CELRSLVSKE MACLPPKQEP PPKEETPTQP  420
APPVNPEPET SDSLLAKSKL SLPLNACRKR SSITARASTS SSGPERRKEQ ASTFRDVKPA  480
MNWKQKEESS DEIEKLHVTK RRRKERRRSS TRNNMTKNVR TRSNTNNERN SDVNENSESK  540
AETEKKSRAL SSNENSESKA ETEKKSNNNA GGKKQSAANF LSRIKSSSSK TVSLLEASKT  600
PENNSKGGRA EQRKNGNGKG NTQKDQGSRR GSGGRQAAKE QDSPSKRNVG RPSKRAAATT  660
AGPAKRARGR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019240.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376123.10.0PREDICTED: uncharacterized protein DDB_G0284459-like
TrEMBLA0A498I3T20.0A0A498I3T2_MALDO; Uncharacterized protein
STRINGXP_009376123.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.16e-56DNA-binding bromodomain-containing protein