PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019262.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 342aa MW: 37888.2 Da PI: 7.9989

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019262.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++++ G+g+W++++ g++R+ k+c++rw +yl Pbr019262.1 14 KGPWTPEEDIILVSYIQERGPGNWRAVPTNTGLHRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.6	3.8e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Pbr019262.1 67 RGNFTDKEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.2E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.064	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	8.99E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.04E-9	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-24	65	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.681	66	116	IPR017930	Myb domain
SMART	SM00717	1.6E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	6.45E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ ERGPGNWRAV PTNTGLHRCS KSCRLRWTNY 60 LRPGIRRGNF TDKEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLSKFQ 120 AEGGGAEGLH SKDQGLNSNS SSQPISRGQW ERRLQTDIHM ARQALRDALS PEKPLTLSSD 180 LNPTDGFSIS SPKKPTLDQS SSSTYASSTE NISRLLKGWM KNPPKKSASL TNLANNKTDY 240 QHYSSSEGTT SVANTANSGN VELSDTFESL FGFESSNSDL SPSMSPDSLF QGESKPDLIS 300 DQLPLSFLEK WLFDESAAPA ALGKDHFFSD MLSDHGNANF L*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ ERGPGNWRAV PTNTGLHRCS KSCRLRWTNY  60
LRPGIRRGNF TDKEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLSKFQ  120
AEGGGAEGLH SKDQGLNSNS SSQPISRGQW ERRLQTDIHM ARQALRDALS PEKPLTLSSD  180
LNPTDGFSIS SPKKPTLDQS SSSTYASSTE NISRLLKGWM KNPPKKSASL TNLANNKTDY  240
QHYSSSEGTT SVANTANSGN VELSDTFESL FGFESSNSDL SPSMSPDSLF QGESKPDLIS  300
DQLPLSFLEK WLFDESAAPA ALGKDHFFSD MLSDHGNANF L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	5e-25	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	5e-25	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019262.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009376268.1	0.0	PREDICTED: myb-related protein 306
Swissprot	P81392	1e-111	MYB06_ANTMA; Myb-related protein 306
TrEMBL	D9ZJ58	0.0	D9ZJ58_MALDO; MYB domain class transcription factor
STRING	XP_009376268.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1016	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	2e-98	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]