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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pbr019423.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 537aa MW: 60822.6 Da PI: 4.437 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 125.8 | 5.1e-39 | 166 | 533 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99
+lL ++ e ++ g+ el ++ l e ++p g++++Rla+ + ++ ++ + l+ ++ + ++ aa++lf++++P+ +++h +aN
Pbr019423.1 166 HHLLKAFSESMEMGQRELQLVIMRCLAEKVNPLGQSLERLAFNLCQGFVDNQHG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRLAHYAAN 252
578888899999999999999**************************9988888......2222..22...356777899****************** PP
GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledle 190
aIlea+ ++ e+vH++ fdi++G+Q L++a a+R++ l++T+++ ++ + + eet+++L++ A+++g++++ + + ++edl
Pbr019423.1 253 TAILEAIPEDvETVHVVEFDIGEGVQLSQLIEAVAKRNKT---LKVTAIKWDVKEsdevapPQWRFEETKKQLQHHARSFGLNLKVEEI---AIEDL- 343
*******9998**************************765...******986666678899999***********************99...44455. PP
GRAS 191 leeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276
++e++ + +E la n+++ l ++ + ++ e+L+l k+l ++ +v++ + +++ n++sF f + +y al++sle+++p
Pbr019423.1 344 VSEIKKANkrggmREFLAFNSMVGLPHMR--RRRSRGLVMEFLRLAKDLLANsargIVTFGDGYacTKRgNDSSFRSFFDANVVHYKALLESLESTFP 439
4444333334566*************997..333444568*********7755556899999775334489*************************** PP
GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSa 372
++ e+r+++E +++++ +++ + + +er+ + +G+++ ++s ++ ++ak +l +s g rv e+ +++ l W++ pLv v
Pbr019423.1 440 SHLgEARMVMELMFVAPYVSSQAWLDKWN-EERE-----CGNLQPLFGLESRRVSREMLMEAKDILGADSSYGVRVGgENGNEMALEWNSIPLVRVET 531
999899*******9999999988888877.3333.....34556789*****************************966677888***********99 PP
GRAS 373 Wr 374
W+
Pbr019423.1 532 WT 533
95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 19.767 | 139 | 512 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.8E-36 | 166 | 533 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 537 aa Download sequence Send to blast |
MMQSEMNFQS LWPYLNVTNS LVDTNEYNDQ MASTEFSSIF MASDEFSESS PFPFSTIFSV 60 ECEQFADCDN LLQVTSMAAE EFPMELGGFE PNFFIDQYEN MYPSCLEGSE GSNTLPSQQF 120 SVEGNDVWSP NSFVTSEASS MDVTSVQQSL TLPRDDMEID NEVSIHHLLK AFSESMEMGQ 180 RELQLVIMRC LAEKVNPLGQ SLERLAFNLC QGFVDNQHGD YLKQESCKNF EAAFNLFYQI 240 FPFGRLAHYA ANTAILEAIP EDVETVHVVE FDIGEGVQLS QLIEAVAKRN KTLKVTAIKW 300 DVKESDEVAP PQWRFEETKK QLQHHARSFG LNLKVEEIAI EDLVSEIKKA NKRGGMREFL 360 AFNSMVGLPH MRRRRSRGLV MEFLRLAKDL LANSARGIVT FGDGYACTKR GNDSSFRSFF 420 DANVVHYKAL LESLESTFPS HLGEARMVME LMFVAPYVSS QAWLDKWNEE RECGNLQPLF 480 GLESRRVSRE MLMEAKDILG ADSSYGVRVG GENGNEMALE WNSIPLVRVE TWTNRS* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Pbr019423.1 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018507385.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
| TrEMBL | A0A498K1N2 | 0.0 | A0A498K1N2_MALDO; Uncharacterized protein | ||||
| STRING | XP_008370546.1 | 0.0 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4274 | 27 | 61 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G08250.1 | 3e-17 | GRAS family protein | ||||




