PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019435.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 199aa MW: 22227.8 Da PI: 6.6986

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019435.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.6	1.5e-10	47	87	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P +Kl+ +++Le+A++Y+k L Pbr019435.1 47 ARERRHRISDRFKILQSLVPGG-----TKLDTVSMLEEAIHYVKFL 87 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.44	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-13	43	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-11	44	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.45E-14	44	91	No hit	No description
Pfam	PF00010	6.1E-8	47	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDYLTTTDSN SNNFASSCSS VTKNNRGGGK NKSNGVRLST DPQSVAARER RHRISDRFKI 60 LQSLVPGGTK LDTVSMLEEA IHYVKFLKTQ IWLHETMINI ADDYHDPLSS SSPPSMLMDI 120 PAHDHDLHPI GFLDHDLCPT GCFDHLSHQL HQQTHDVYAH SDFVSAAASV QPPSPPAVNI 180 PIMPEYNCFQ RSRNNWQY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019435.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009348213.1	1e-148	PREDICTED: transcription factor bHLH140-like
Refseq	XP_009376442.1	1e-148	PREDICTED: transcription factor bHLH140-like
Swissprot	Q9M041	7e-29	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A498K2E0	1e-124	A0A498K2E0_MALDO; Uncharacterized protein
STRING	XP_009348213.1	1e-148	(Pyrus x bretschneideri)
STRING	XP_009376442.1	1e-148	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	6e-30	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]