PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019494.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 447aa    MW: 47971.9 Da    PI: 6.6088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019494.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20231280255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Pbr019494.1 231 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 280
                  7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-36231294IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-33231289IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22231289IPR016177DNA-binding domain
PROSITE profilePS5103225.712231288IPR001471AP2/ERF domain
PfamPF008474.0E-14231280IPR001471AP2/ERF domain
PRINTSPR003671.3E-11232243IPR001471AP2/ERF domain
CDDcd000189.03E-15239290No hitNo description
PRINTSPR003671.3E-11254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MCLLKVANQR SSGGGGQYDR FDSPNDASDV DANINNINYG GGLELPPPYQ QQEGQQHVST  60
STPTMFLGYG RAATEMSAMV SALTHVVSGQ RGSDSWGHIG SGGVTSSLGQ LYSSASSSSA  120
SPLSAAFPSS ASGSHYWVGQ KRGREEDFAS ASAQSQFMES GNRAFRGGYR DYRGTQSESS  180
SGGATATEEA TNFATTHTTT PPTVSATTAV PTTPSSAESV SFGETGERRR RYRGVRQRPW  240
GKWAAEIRDP HKAARVWLGT FDTAEAAARA YDEAALRFRG NRAKLNFPEN VRLIQPPAAV  300
QTFNSNSRPT QSAQPLQPPP PPPQPPQQQL YHPQQAFHPS SDPIRDYFDY SQLLQNSADS  360
NLLEQMYYYN SQLASLQSSL LQPTTSSTPS SALPSSASSS SFPLFFSEQN QQQGFFLQPQ  420
DPNQGGSSDF QAPSWSHSSN NPSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22230291163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019494.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324560.0GU732456.1 Malus x domestica AP2 domain class transcription factor (AP2D32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376561.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLD5L1160.0D5L116_MALDO; AP2 domain class transcription factor
STRINGXP_009376561.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.17e-17ERF family protein