PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019568.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 165aa    MW: 19031.8 Da    PI: 9.0033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019568.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3382.9e-1241132184
                  EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT.-EEEEEE CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg.DfvvFkl 84 
                  f+k+lt+sdv    +rl+++k+ +e+h       ++++++++ +t++d +g+++ + ++ + ++   vlt+GW++F ++ +L e+ Dfv+  +
  Pbr019568.1  41 FEKQLTSSDVRDDqSRLSMSKEDVENHifpllkdDEDPNQGVHVTIYDMDGKEYPMVFKTWMSKI-NVLTGGWNSFRQDRRLVEKiDFVTVWV 132
                  99********98779*******************88999*******************8888874.68**************85438887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023624.9E-941145IPR003340B3 DNA binding domain
SMARTSM010192.6E-441149IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1541136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1541135IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-1341145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MMLGEPQLQG IQGLFYGNYA PPDLPPVPSL RPLIQVHSKP FEKQLTSSDV RDDQSRLSMS  60
KEDVENHIFP LLKDDEDPNQ GVHVTIYDMD GKEYPMVFKT WMSKINVLTG GWNSFRQDRR  120
LVEKIDFVTV WVFRNVVNGS LCFAINSRRF PAVSEAIKRR KRQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019568.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376601.11e-120PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A498HTH41e-115A0A498HTH4_MALDO; Uncharacterized protein
STRINGXP_009376601.11e-119(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.17e-30B3 family protein