PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019593.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

SRS

Protein Properties

Length: 233aa MW: 25571.5 Da PI: 9.3087

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019593.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	186.6	9.3e-58	15	158	5	153
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 +++CqdCGnqakk+Ca+ RCRtCCk +gf+C+thvkstWvp+++rr+ +qql + ++ a+ ++ ++ ++r+ a+ + ++ ++s + + Pbr019593.1 15 GSRCQDCGNQAKKECAYFRCRTCCKGKGFHCQTHVKSTWVPVYRRRHThHQQLPSIDPQHPAHLHQGHNYNPRRP------AAGHVITNPSSSGQDQQ 106 679*****************************************97356666666666666677776666654......33333344445667788 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++P+ev+s+a frcvrvssv+d ++ aYqt+v igGhvfkGiL dqG++ Pbr019593.1 107 VNNFPAEVNSMATFRCVRVSSVEDTVNKHAYQTSVVIGGHVFKGILSDQGPN 158 999*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-54	15	158	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-26	18	59	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.4E-22	110	157	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MVRQGRGGRE EEIMGSRCQD CGNQAKKECA YFRCRTCCKG KGFHCQTHVK STWVPVYRRR 60 HTHHQQLPSI DPQHPAHLHQ GHNYNPRRPA AGHVITNPSS SGQDQQVNNF PAEVNSMATF 120 RCVRVSSVED TVNKHAYQTS VVIGGHVFKG ILSDQGPNYT TAAGQSSSSQ HVMNKETSNF 180 ISAAASASNI TASTSSAAAD HQVPYHHQLP SSYPLIPFNA FMPGTQFFLN PK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019593.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009376523.1	1e-175	PREDICTED: protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SD40	2e-48	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A498K002	1e-163	A0A498K002_MALDO; Uncharacterized protein
STRING	XP_009376523.1	1e-175	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	3e-48	SHI-related sequence3

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]