PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019669.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 186aa    MW: 20464.9 Da    PI: 9.3977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019669.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.5e-163281255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+G+r +k +g+WvAeIr+p   +kr r++lg++  +  Aa+a++ a  +l+g
  Pbr019669.1 32 QYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTPPMAAARAYDTAVFCLRG 81
                 7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.83E-2331116No hitNo description
Gene3DG3DSA:3.30.730.101.8E-243183IPR001471AP2/ERF domain
PfamPF008475.8E-93281IPR001471AP2/ERF domain
SMARTSM003808.1E-2632120IPR001471AP2/ERF domain
PROSITE profilePS5103219.57232114IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-163283IPR016177DNA-binding domain
PRINTSPR003671.1E-113344IPR001471AP2/ERF domain
PROSITE profilePS510328.99285114IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-585115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-985115IPR001471AP2/ERF domain
PRINTSPR003671.1E-1196116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEGDYCCSSS SSSSTSTSME KRKHPDHRQE KQYRGIRMRK WGKWVAEIRE PNKRSRIWLG  60
SYTPPMAAAR AYDTAVFCLR GPSPGSYPPP MAAARAYDTA VFCLRGPSAR LNFPELVFQD  120
DGQQLHDMSA ASIRKKATEV GAKVDAVQTA LRASPTSQSK TTLSRGGSLK PDLNEYPDPE  180
NSDES*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324661e-152GU732466.1 Malus x domestica AP2 domain class transcription factor (AP2D42) mRNA, complete cds.
GenBankJF4123521e-152JF412352.1 Malus x domestica ethylene response factor 5 mRNA, complete cds.
GenBankJQ6557681e-152JQ655768.1 Malus sieversii dehydration-responsive element binding protein (DREBA5) mRNA, complete cds.
GenBankKM5065731e-152KM506573.1 Eriobotrya japonica transcription factor ERF7 (ERF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359912.11e-103PREDICTED: ethylene-responsive transcription factor ERF011
SwissprotO221742e-43ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0H3Y7W21e-100A0A0H3Y7W2_9ROSA; Transcription factor ERF7
STRINGXP_009359912.11e-103(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-45DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]