PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019737.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 229aa MW: 24546 Da PI: 8.5658

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019737.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.9	5e-31	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ Cvl+p++ p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++q++q+++e Pbr019737.1 2 SCNGCRVLRKGCSATCVLRPCLhwidsPQAQGNATLFLAKFFGRSDLLSFVSAVPETQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWQVCQSAVE 99 6***********************************************************************************************99 PP DUF260 94 lal 96 ++l Pbr019737.1 100 TVL 102 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.636	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSCNGCRVLR KGCSATCVLR PCLHWIDSPQ AQGNATLFLA KFFGRSDLLS FVSAVPETQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WQVCQSAVET VLSGGVLRPL PAFTAPSLDE 120 SSDMFSRGTC TPQNRCYQSV PSASAYYGAE RIQPFEVAGF SLKPNLAAGE RGRGRGMRSY 180 ISAAMDQRLR DTVSFDSEES AMTTTTTRSF KSGGGLNLKD CKLLNLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019737.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009360516.1	1e-168	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SN23	2e-62	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A498HRD9	1e-139	A0A498HRD9_MALDO; Uncharacterized protein
STRING	XP_009360516.1	1e-167	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-65	LOB domain-containing protein 38