PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019738.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 225aa    MW: 23914.7 Da    PI: 6.9471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019738.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039112131120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ykC+ C+ksF++   L  H 
  Pbr019738.1 112 YKCSVCDKSFPTGQALGGHK 131
                  9**********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-6111136No hitNo description
PfamPF139121.1E-13112136IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45112134IPR007087Zinc finger, C2H2
SMARTSM003550.007112134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4112134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALQALNSPT AAGPSPFPFE NEASSLGYAE PWTKRKRSKR PRLDTPHSEE EYLAICLIML  60
ARGNRGGDLA STTATAATDT KETNSAASHQ IITQSPSMEP STSAAPPVKL SYKCSVCDKS  120
FPTGQALGGH KRCHYDGGAA GSTATTTATT SVITSSEGVG STSHAVSHGH PRETFDLNLP  180
ALPEFSRDFF VSGEDEVESP HPTKKPRLLL MMKPKIEISQ DQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019738.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2793105e-41AY279310.1 Malus x domestica enolase-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354104.11e-121PREDICTED: zinc finger protein ZAT10
TrEMBLD9ZIT41e-112D9ZIT4_MALDO; C2H2L domain class transcription factor
STRINGXP_009354104.11e-121(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-33salt tolerance zinc finger