PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019808.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 248aa    MW: 27365.2 Da    PI: 4.8097
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019808.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ + + +G+g +W + +++ g++R++k+c++rw++yl
      Pbr019808.1 14 RGPWSPEEDAALKSYLESHGTGgNWILLPKKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-22565IPR009057Homeodomain-like
PROSITE profilePS5129421.121966IPR017930Myb domain
SMARTSM007172.4E-111364IPR001005SANT/Myb domain
PfamPF002493.1E-141462IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-191590IPR009057Homeodomain-like
CDDcd001675.74E-91662No hitNo description
PROSITE profilePS500904.2866399IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-76690IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRAPCCDKD NVKRGPWSPE EDAALKSYLE SHGTGGNWIL LPKKAGLRRC GKSCRLRWLN  60
YLRPDIKHGS FTEEEDSIIF SLYNQMGSRQ VKNISSEERE PTITNNANFS GIPKTEEPQD  120
PAFSTFQTAT LQTLSDVNFG LNAYNQTLSL NPDQLYSPKP LGFSNFGASS RRNFSTTVSL  180
SQEGSSVSDS SSIAGNGYLD QDSWFCMDYG YGMAYDNNVN YYGMCFEKKT SEAVPSGCTD  240
LGELFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-141489780B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019808.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361466.11e-170PREDICTED: transcription factor MYB36-like
TrEMBLA0A498HTW41e-166A0A498HTW4_MALDO; Uncharacterized protein
STRINGXP_009361466.11e-169(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-51MYB family protein