PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019838.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 353aa    MW: 38536.9 Da    PI: 8.7132
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019838.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.8e-18218251134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+t++TplWR+gp+g+k+LCnaCG+++rk +
  Pbr019838.1 218 CSDCNTSTTPLWRSGPRGPKSLCNACGIRQRKAR 251
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.651212248IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-18212263IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-12215251No hitNo description
Gene3DG3DSA:3.30.50.103.7E-15216251IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.95E-12217247No hitNo description
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
PfamPF003202.2E-16218251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTPVYLNPPS SPFSHVEQPN DQDQRLKLFI SSSYNNQAAA SSCSSLISSF PTFFDSFKDQ  60
RAGSSTTTTT TLGHDHSLQY HHKTENHMWD CGTSTYDQAS SPSSLVQPHV VDVISTKDHR  120
LMSACADHER EINGRGGEVG KSNNNIRPRA VKWMSSKMRL MQKMTNPDLA PAGTTENHIL  180
AAAENAEHKF QVVQHQENSD ETSFSRNSNN TTPDVRVCSD CNTSTTPLWR SGPRGPKSLC  240
NACGIRQRKA RRAMAEAAAA AANGFVVGAT DTSSTHKEKK PRGSHSINVT RCKNKSKLIV  300
TDTASISPNN KINSNNDKIC FKGLGFQRVF PQDVAEAAIL LMELSCGLIN HS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019838.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361893.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A498HTZ60.0A0A498HTZ6_MALDO; Uncharacterized protein
STRINGXP_009361893.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.15e-19cytokinin-responsive gata factor 1