PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019850.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 179aa MW: 19999.7 Da PI: 8.3041

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019850.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.3	1.9e-36	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++r+kC++dC+lapyfp+++p +f n+ klFG+s++ kl+++lp++ r+ ams+++ eA+ ra+dPv G+++v+++l + +++++ael++++ Pbr019850.1 6 SCAACKHQRKKCPEDCPLAPYFPSNHPTNFHNALKLFGVSRLAKLVTDLPPHLRTPAMSTIFVEADHRAKDPVGGCHAVVRSLLWSINKHQAELDRVR 103 6*********************************************************************************************9988 PP DUF260 99 ee 100 + Pbr019850.1 104 YQ 105 66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.074	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-34	6	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MTKSRSCAAC KHQRKKCPED CPLAPYFPSN HPTNFHNALK LFGVSRLAKL VTDLPPHLRT 60 PAMSTIFVEA DHRAKDPVGG CHAVVRSLLW SINKHQAELD RVRYQLELCR RGGNVMPLAQ 120 CLGDFKYNVG AGNVYDQTQF HLVQKNVFQE QEEQGHVGGG VVPQPHEEQS NVFDIRSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-23	7	106	12	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-23	7	106	12	111	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019850.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009365511.1	1e-133	PREDICTED: LOB domain-containing protein 25-like
TrEMBL	A0A498HVN8	1e-119	A0A498HVN8_MALDO; Uncharacterized protein
STRING	XP_009365511.1	1e-132	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22907	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-28	LOB domain-containing protein 22