PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019902.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 216aa    MW: 23787.3 Da    PI: 4.5318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019902.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.6e-099322347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia +++ gRt++++k++w++ 
      Pbr019902.1  9 RWSLIAGRLP-GRTDNEIKNYWNTT 32
                     5*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.435137IPR017930Myb domain
SuperFamilySSF466893.43E-7739IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-12833IPR009057Homeodomain-like
PfamPF002491.0E-6932IPR001005SANT/Myb domain
CDDcd001672.60E-6933No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEKPSQKSRW SLIAGRLPGR TDNEIKNYWN TTLWKKSKAD SPSGCSKETS QHPSKSVVKK  60
KDVESKTTST AAAKPLVIRT KATRLSKILV PQKIPSDENY TAAAANPLEL QSHQTQLAEQ  120
GGSTEEFPRT NADDRSNILK NFGCDEDDID VKGDQYCNEF QSLDSIPLDE AMINDGCWTV  180
GNGCELEDYG ASLDLDSLAF LLDSEDWPSQ ENVIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019902.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6011230.0KT601123.1 Pyrus x bretschneideri cultivar Red Zaosu TT2-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362666.11e-151PREDICTED: transcription repressor MYB6-like
TrEMBLA0A498HSQ41e-131A0A498HSQ4_MALDO; Uncharacterized protein
STRINGXP_009362666.11e-150(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-12MYB family protein