PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019904.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 101aa MW: 11210.3 Da PI: 4.2531

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019904.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.3e-07	14	43	1	27
TSSS-HHHHHHHHHHHHHTTTT...-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktI 27 rg+WT Ed++l+++v+++G + ktI Pbr019904.1 14 RGPWTDVEDQILLEYVREMGETierNRKTI 43 89******************9888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-7	6	34	IPR009057	Homeodomain-like
CDD	cd00167	0.00852	16	34	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MGRSSSCEKD GLRRGPWTDV EDQILLEYVR EMGETIERNR KTIEDFAEEA ASSLETDSHF 60 TKELRQPSDG IEAKNTEAVS DSRDGFLYQT LMTVICGGSS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019904.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008337002.1	4e-20	transcription factor WER-like
STRING	XP_008337002.1	1e-19	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	2e-09	myb domain protein 14