PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020020.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 276aa    MW: 30047.5 Da    PI: 7.1814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020020.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022104126123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Pbr020020.1 104 FPCNYCQRKFYSSQALGGHQNAH 126
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-6101131No hitNo description
PROSITE profilePS5015711.281104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEPARNSETN IFSVAEVPPC PNTPLQDPKE TKQKLRVEED EEEMKDQEKQ KKPSIRIDLE  60
ASDSDSNRGF SFDNPELNLL ESLETGSSEG TTALVSDAAE PRVFPCNYCQ RKFYSSQALG  120
GHQNAHKRER TLAKRGQRVL GSHITASGAS FGYPYYSSLA SLPLHGGAFR ALDIQAHSMI  180
HKPSSVMPSS AIGFGSSYGH RSFRSRPIFD QQPTVGKLGV AAARGGGGAG RFDMAKSNMV  240
SQGNEEIGKC WLGNDGRFKS SSDQEEMKLD LSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363923.10.0PREDICTED: zinc finger protein 3
TrEMBLD9ZIS41e-179D9ZIS4_MALDO; C2H2L domain class transcription factor
STRINGXP_009363923.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.14e-41zinc finger protein 3