PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr020098.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 523aa MW: 54214.4 Da PI: 8.7884

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr020098.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Pbr020098.1 123 WKCERCSKKYAVQSDWKAHMKTC 145 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.5E-5	111	144	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.15E-5	118	167	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MSSSRLLPHV DGQIYTSATG SEFGLIGFRL PARPEPAAPP AGPQPAVEAE ACNKGFQRDQ 60 NLRPPRRGHN LPWKLKQRTS KEVRKRVYVC PETSCVHHHP TRALGDLTGI KKHFCRKHGE 120 KKWKCERCSK KYAVQSDWKA HMKTCGTREY KCDCGTLFSR RDSFITHRAF CDALAEESAK 180 TQTLVIGPDG SMNPNSNPTP SAKSGVVGSP PPPPHTPSNT VVSPALSIQS SDLPENPIGL 240 SPPAQATSCL ATTAISTTAT ATTSTGNCNN GNSVFASIFA PSSASALITQ PPGPPQTSPP 300 SSFSNQVSAL GRPDGSTTIS SINEPTSLSL TTSLYLSSNG SSLFPTPDQD HRNYAQPAAM 360 SATALLQKAA QMGQMGAAAS NASLLRGLGL STTSSPSQES STTLQWNKEP ESGGAAHVGA 420 ELGLELLSTA NAAQLTDLMM GPPSSFGGQP MTRDLLGLSI GSSGGGGASA AGFSAFLNSF 480 GGSGGAFNVA TAYGSGGGGG GSSQRETWEG AQDRKPDRSS LL*

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MSSSRLLPHV DGQIYTSATG SEFGLIGFRL PARPEPAAPP AGPQPAVEAE ACNKGFQRDQ  60
NLRPPRRGHN LPWKLKQRTS KEVRKRVYVC PETSCVHHHP TRALGDLTGI KKHFCRKHGE  120
KKWKCERCSK KYAVQSDWKA HMKTCGTREY KCDCGTLFSR RDSFITHRAF CDALAEESAK  180
TQTLVIGPDG SMNPNSNPTP SAKSGVVGSP PPPPHTPSNT VVSPALSIQS SDLPENPIGL  240
SPPAQATSCL ATTAISTTAT ATTSTGNCNN GNSVFASIFA PSSASALITQ PPGPPQTSPP  300
SSFSNQVSAL GRPDGSTTIS SINEPTSLSL TTSLYLSSNG SSLFPTPDQD HRNYAQPAAM  360
SATALLQKAA QMGQMGAAAS NASLLRGLGL STTSSPSQES STTLQWNKEP ESGGAAHVGA  420
ELGLELLSTA NAAQLTDLMM GPPSSFGGQP MTRDLLGLSI GSSGGGGASA AGFSAFLNSF  480
GGSGGAFNVA TAYGSGGGGG GSSQRETWEG AQDRKPDRSS LL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	119	184	3	68	Zinc finger protein JACKDAW
5b3h_F	3e-35	119	184	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr020098.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364602.1	0.0	PREDICTED: protein indeterminate-domain 2-like
TrEMBL	A0A498HP06	0.0	A0A498HP06_MALDO; Uncharacterized protein
TrEMBL	D9ZIT6	0.0	D9ZIT6_MALDO; C2H2L domain class transcription factor
STRING	XP_009364602.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	7e-85	C2H2 family protein