PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020132.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 85aa    MW: 9497.56 Da    PI: 7.8447
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020132.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-10244444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT+   +l+ +a +++ ++   +W+ +a+ +g g+t +++k ++
      Pbr020132.1  2 WTPKQNKLFEKALAEYDKDtqdRWHNVAKAVG-GKTVEEVKRHY 44
                     ********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.553149IPR017884SANT domain
SuperFamilySSF466891.35E-12256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-4248IPR009057Homeodomain-like
SMARTSM007172.4E-5250IPR001005SANT/Myb domain
PfamPF002499.2E-8244IPR001005SANT/Myb domain
CDDcd001674.28E-8244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MWTPKQNKLF EKALAEYDKD TQDRWHNVAK AVGGKTVEEV KRHYEILVHD LMHIESGQVP  60
IPNYKAAGSS GSNGSNRGFG DEQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-292681177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020132.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364936.12e-58PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1732e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A251R9E31e-45A0A251R9E3_PRUPE; Uncharacterized protein
STRINGXP_009364936.19e-58(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-36RAD-like 6