PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr020186.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 74aa MW: 8269.74 Da PI: 10.9998

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr020186.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.9	1.2e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienksnrqvtfskRrng+lKKA+ELSvLCdaeva+iifs +gklye+ss Pbr020186.1 9 KRIENKSNRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSGRGKLYEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.5E-42	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.193	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.75E-38	2	68	No hit	No description
SuperFamily	SSF55455	5.1E-31	2	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-33	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MGRGKVEMKR IENKSNRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSG RGKLYEFSSS 60 LSSDMLIRSK LSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-21	1	68	1	68	MEF2C
5f28_B	2e-21	1	68	1	68	MEF2C
5f28_C	2e-21	1	68	1	68	MEF2C
5f28_D	2e-21	1	68	1	68	MEF2C
6bz1_A	2e-21	1	68	1	68	MEF2 CHIMERA
6bz1_B	2e-21	1	68	1	68	MEF2 CHIMERA
6bz1_C	2e-21	1	68	1	68	MEF2 CHIMERA
6bz1_D	2e-21	1	68	1	68	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr020186.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN651403	3e-92	JN651403.1 Malus x domestica cultivar Royal Gala MADS-box transcription factor (MADS6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018500632.1	2e-36	PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X3
Swissprot	Q8LLR1	3e-32	MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBL	A0A498JRJ1	1e-34	A0A498JRJ1_MALDO; Uncharacterized protein
STRING	XP_009346217.1	5e-35	(Pyrus x bretschneideri)
STRING	XP_008374660.1	4e-35	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	6e-33	AGAMOUS-like 6

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]