PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020227.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 223aa    MW: 24878.7 Da    PI: 8.4908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020227.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.35.9e-163281255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d s   ++ r +lg+f+ +eeAa a+++a++ l+g
  Pbr020227.1 32 RFLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDREEEAALAYDKAARLLRG 81
                 577******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.69E-303189No hitNo description
SMARTSM003803.2E-313298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-283290IPR001471AP2/ERF domain
PROSITE profilePS5103220.0073289IPR001471AP2/ERF domain
PRINTSPR003672.3E-63344IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-193389IPR016177DNA-binding domain
PfamPF008473.0E-103581IPR001471AP2/ERF domain
PRINTSPR003672.3E-65571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDSSSMSQPI QTQTFQENKE KNTRKGSKNG KRFLGVRQRP SGRWVAEIKD SSQKLRLWLG  60
TFDREEEAAL AYDKAARLLR GRNAKTNFPS CHILNTHEEN CSILRKNPRL SQLLQHAIMK  120
NHARSSSLNC VSSAKTNLWD RSQMRGIEFD TLVEETIVCS SSGAATSGQD HGDHDEDGNN  180
KLCALSFGSC KVYSSVVVAP SFSSSSQCQQ AHNEEEKYYQ EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-153089363ATERF1
3gcc_A3e-153089363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348049.11e-167PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBLA0A498JN801e-139A0A498JN80_MALDO; Uncharacterized protein
STRINGXP_009348049.11e-166(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-27related to AP2 11