PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr020365.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 200aa MW: 22472.5 Da PI: 9.8225

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr020365.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.3e-15	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l ++v++ G g W++ + g+ R++k+c++rw +yl Pbr020365.1 13 KGAWSKQEDEKLTQYVEKNGEGIWRSLPLAAGLLRCGKSCRLRWVNYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	53.4	6e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Pbr020365.1 66 RGNFGEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-20	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.614	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	5.14E-27	11	107	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-11	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-13	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	1.15E-8	15	60	No hit	No description
PROSITE profile	PS51294	25.94	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-26	63	116	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-16	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-16	66	111	IPR001005	SANT/Myb domain
CDD	cd00167	6.42E-12	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MRKPCCEKRK TKKGAWSKQE DEKLTQYVEK NGEGIWRSLP LAAGLLRCGK SCRLRWVNYL 60 RPNVKRGNFG EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LRRKLIQMGV 120 DPNNHRIGHT HNIGLTKPSF GSRKVNYLSE PVDSQGDKDS DQIKPLSDST SGLESNTSCS 180 GLPDLNLDIT IGPPSSFGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-26	13	115	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr020365.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB434547	1e-35	AB434547.1 Fagus crenata FcMYBS2 mRNA for transcription factor MYBS2, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347822.1	1e-146	PREDICTED: myb-related protein 308-like
Swissprot	P81393	4e-71	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A498JL09	1e-132	A0A498JL09_MALDO; Uncharacterized protein
STRING	XP_009347822.1	1e-145	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-72	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]