PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020406.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YB
Protein Properties Length: 145aa    MW: 16157.2 Da    PI: 6.7774
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020406.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB157.22.7e-49499297
        NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                 +eqd +lPianv+rimk++lP +akisk+ak+t+qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+++   yl+kyre+e++k
  Pbr020406.1  4 QEQDGMLPIANVGRIMKQILPPRAKISKEAKQTMQECATEFLSFVTGEASDKCHKENRKTVNGDDICWALSALGFDNYAQAAMRYLHKYREAERDK 99
                 69********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-474119IPR009072Histone-fold
SuperFamilySSF471133.22E-376120IPR009072Histone-fold
PfamPF008081.7E-251073IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-163755No hitNo description
PRINTSPR006151.7E-165674No hitNo description
PRINTSPR006151.7E-167593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MVDQEQDGML PIANVGRIMK QILPPRAKIS KEAKQTMQEC ATEFLSFVTG EASDKCHKEN  60
RKTVNGDDIC WALSALGFDN YAQAAMRYLH KYREAERDKA AANNNQNTEN IASHGGLQVR  120
EQIQTSNLEF RALEKGDNSL ITKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-39494292Transcription factor HapC (Eurofung)
4g92_B3e-39494292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020406.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376649.11e-106PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO040278e-55NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A498K3401e-92A0A498K340_MALDO; Uncharacterized protein
STRINGXP_009376649.11e-105(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-57nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]