PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020473.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family DBB
Protein Properties Length: 289aa    MW: 30956.8 Da    PI: 5.5616
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020473.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.2e-06447542
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  C+ +e   ++  C  ++  lC  C ++ Hk       H++vpl
  Pbr020473.1  4 QCNVCEAAVANVLCCADEAALCWACDEKVHKAnklaskHQRVPL 47
                 7*****************************88999999999986 PP
2zf-B_box27.75.8e-095292337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 ++kC+ ++e    +fC +++ llC++C ++ H        H
  Pbr020473.1 52 MPKCDICQEAVGYFFCLEDRALLCRKCDVSVHTAnsfvsaH 92
                 799*******9*********************554555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.452147IPR000315B-box-type zinc finger
CDDcd000213.07E-7347No hitNo description
SMARTSM003365.0E-11447IPR000315B-box-type zinc finger
SMARTSM003361.5E-155097IPR000315B-box-type zinc finger
PROSITE profilePS501199.0155097IPR000315B-box-type zinc finger
PfamPF006434.6E-75291IPR000315B-box-type zinc finger
CDDcd000211.24E-85397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKIQCNVCEA AVANVLCCAD EAALCWACDE KVHKANKLAS KHQRVPLCSS HMPKCDICQE  60
AVGYFFCLED RALLCRKCDV SVHTANSFVS AHRRFLLTGI KVGPEPAEPD SGGGNGVCVG  120
ASSTVKLHSG SASVSRCETH NPLPVECKEG APPGGGISFT GGSAAGSVPQ CYIDEFLGFS  180
DLDQSFDYID NGSSKADCSK LGGYDSPVLR SSEEELEDYE CIGEVPETSW MVPQVPSPPT  240
ASGLYWPKSF QNLSDSSTTF VPDICHSQMQ SSLRSQHNGT ISKRRRQF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020473.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376736.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM24e-84BBX22_ARATH; B-box zinc finger protein 22
TrEMBLD9ZIW30.0D9ZIW3_MALDO; COL domain class transcription factor
STRINGXP_009376736.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-86light-regulated zinc finger protein 1