PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr020546.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 221aa MW: 24008.2 Da PI: 7.1293

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr020546.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.8	4.6e-35	56	150	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.........k 89 ++ + ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++ +a+ ++ s s+s++ +s + + Pbr020546.1 56 SRRNTRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTLPAEPISTTSPSVSSQMPSVTcrvqplkslR 150 67899*********************************************************988887775555555555444444444443331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.7E-30	59	153	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.963	60	114	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MASEMALQPL HKLEDRKPTV LPTAVLTSAT IQTAPSLSQL SDLQLQAQPK PQKQVSRRNT 60 RDRHTKVNGR GRRVRMPAMC AARIFQLTRE LGHRSDGETI EWLLRHAEPS IIAATGSGTL 120 PAEPISTTSP SVSSQMPSVT CRVQPLKSLR SSGQFLYPAA AQAHQAMQLQ LDLCQPMGAD 180 YNAGYRHMPF TSLLLQTGES EVEEGQAEEE VVGVGIGDDE *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr020546.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009376810.1	1e-161	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	3e-36	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A498IFK3	1e-135	A0A498IFK3_MALDO; Uncharacterized protein
STRING	XP_009376810.1	1e-161	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	6e-36	TCP family protein