PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr020677.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 207aa MW: 23168.1 Da PI: 8.1599

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr020677.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	32	52	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+++F + L Hi +H Pbr020677.1 32 CKLCDRVFMSTQALIAHIESH 52 ******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.598	30	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSRYNWNWRQ GNMFGSSNPA PPRATDLTQI ACKLCDRVFM STQALIAHIE SHLADDDLST 60 TVRLRQLNLP NSTDPFISSN ALLRPSTNPF HQRRLFHGAN NQICFVPSPA PPPPPQTHYH 120 FPHPQQPQIP HYLLPRNPNV NSGAAGSHHM MMPYGNQMAH VVREENHSDS TRPFLSQLER 180 PIPSINFGLD ASGNPNFDNL DLALKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr020677.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021804636.1	4e-33	uncharacterized protein LOC110748960
TrEMBL	A0A498I553	1e-133	A0A498I553_MALDO; Uncharacterized protein
STRING	EMJ25623	2e-36	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14890	8	12