PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020962.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 182aa    MW: 20301.6 Da    PI: 10.0929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020962.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00133860123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ F++   L  H  +H
  Pbr020962.2 38 FECKTCNRKFTSFQALGGHRASH 60
                 89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.33E-83760No hitNo description
PfamPF139121.7E-113762IPR007087Zinc finger, C2H2
SMARTSM003550.193860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5753865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
SuperFamilySSF576672.33E-890117No hitNo description
PfamPF139123.0E-1194119IPR007087Zinc finger, C2H2
PROSITE profilePS501579.36995122IPR007087Zinc finger, C2H2
SMARTSM003550.2995117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRGEELGFGL KGLDMAKYLM LPSFGMETKF KTCSNDVFEC KTCNRKFTSF QALGGHRASH  60
KRPRTLMSRD DEDRKDEREK GNNKSMVMNK KAKTHECSIC GLEFGMGQAL GGHMRKHRAS  120
NMDMASFSYA PSAVTSKIPV LTRSSSKRVM SLEMDLNLTP LENDLKLLFG KMAPKVDAFV  180
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020962.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377110.11e-132PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A498K4T01e-111A0A498K4T0_MALDO; Uncharacterized protein
STRINGXP_009377110.11e-131(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-43C2H2 family protein