PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021047.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 283aa    MW: 32127.1 Da    PI: 5.059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021047.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-19107157155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr+++ +g+W+AeIrdp+    r  r++lg+f taeeA  a+++a+ +++g
  Pbr021047.1 107 KKYRGVRQRP-WGKWAAEIRDPK----RgVRVWLGTFETAEEAGMAYDKAAIAFKG 157
                  59********.**********83....46**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-32107164No hitNo description
SuperFamilySSF541713.01E-21108164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-30108164IPR001471AP2/ERF domain
PROSITE profilePS5103223.169108165IPR001471AP2/ERF domain
PfamPF008471.8E-12108157IPR001471AP2/ERF domain
SMARTSM003801.3E-35108171IPR001471AP2/ERF domain
PRINTSPR003673.3E-11109120IPR001471AP2/ERF domain
PRINTSPR003673.3E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDRAKQYTQR RTVKNKLVKK LTTRFRESTA GAPQIVRISV TDDNATDSSS DEAEAEPGRK  60
YRVLVKRVIN EVRIEDPSPS PALVSKPTKP SRCRAAEESN EISPNGKKYR GVRQRPWGKW  120
AAEIRDPKRG VRVWLGTFET AEEAGMAYDK AAIAFKGPLA LTNFLKPPEI AIPDISEEDC  180
NPISQSPLIS QCGHSVRSPT SVLSGREPEI EWKVSERQNF GVFDTEFWLN DCFEPPIFFE  240
EMSVLPETLL KNEDFSDLSL DFRSCNWDDV EDYFQDAYEL KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22106164362ATERF1
3gcc_A2e-22106164362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021047.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324440.0GU732444.1 Malus x domestica AP2 domain class transcription factor (AP2D20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377254.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLD5L1040.0D5L104_MALDO; AP2 domain class transcription factor
STRINGXP_009377254.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-42cytokinin response factor 4