PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021092.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 249aa    MW: 27135.4 Da    PI: 6.7806
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021092.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.95.4e-418106199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk++rrkC+++Cv+apyfp +qp+kfanvh ++Gasnv k+l++l+   reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l  +k
  Pbr021092.1   8 PCAACKFQRRKCTQECVFAPYFPPDQPQKFANVHTVYGASNVGKILNELNVAYREDAVTSLAYEAEARLRDPVYGCVGFISFLQNRLRQVQTDLYNAK 105
                  7********************************************************************************************98887 PP

       DUF260  99 e 99 
                  +
  Pbr021092.1 106 K 106
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.9637108IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-408105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSSNTHSPCA ACKFQRRKCT QECVFAPYFP PDQPQKFANV HTVYGASNVG KILNELNVAY  60
REDAVTSLAY EAEARLRDPV YGCVGFISFL QNRLRQVQTD LYNAKKDLSA YIGPQALMIP  120
LLGATTGPPP QQGCREGQLL IRDQHQQQLF EAHQQELVRF NINGMDAAAS LVNGNGFNQI  180
PAAAASKGVV SGSLGLGGAF DNNHYNQIEQ QAAAHHLNSL DHQLQAQLMF QPHPAALESQ  240
QKSVGEES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-44711110114LOB family transfactor Ramosa2.1
5ly0_B1e-44711110114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021092.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377477.10.0PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ39e-62LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A498IUH31e-171A0A498IUH3_MALDO; Uncharacterized protein
STRINGXP_009377477.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.19e-61ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]