PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021193.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 344aa    MW: 38562.3 Da    PI: 7.2571
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021193.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv++++++G g+W+t+++  g++R++k+c++rw +yl
      Pbr021193.1 14 KGPWTPEEDHKLVHYIQKHGHGRWRTVPKNAGLKRCGKSCRLRWANYL 61
                     79********************************************97 PP
2Myb_DNA-binding569.1e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W+tIa++++ gRt++++k++w+++
      Pbr021193.1  67 RGRFSLEEEETIIQLHSVLGNK-WSTIASRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.519961IPR017930Myb domain
SuperFamilySSF466891.12E-3111108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002497.2E-181461IPR001005SANT/Myb domain
CDDcd001674.89E-121661No hitNo description
PROSITE profilePS5129425.93162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2665116IPR009057Homeodomain-like
SMARTSM007176.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.0E-1567111IPR001005SANT/Myb domain
CDDcd001677.44E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGKIPCCETN GLKKGPWTPE EDHKLVHYIQ KHGHGRWRTV PKNAGLKRCG KSCRLRWANY  60
LRPDIKRGRF SLEEEETIIQ LHSVLGNKWS TIASRLPGRT DNEIKNYWNT HIRKRLLKMG  120
IDPVTHTPRL DLLELTSLLS STLCNSSSDN LQLNIPNLLS IGPITDPELL NLTATLLSSQ  180
RRPQSSYPEF PSKNHAQQNP LSLLQNNDQN QFQSNQLPNI APFLNQPLIT DFGHPCSTNG  240
ADQSSFVPTI TNQVGSYDSN YESIISHNIP GQDYQPACIS DNVNNQTFQN MCSFGSLLST  300
PSSSPATTTY ANCCTEDERD SFCSNILNMY HDIPNDLNVT QLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-31121162105C-Myb DNA-Binding Domain
1msf_C3e-31121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021193.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377334.10.0PREDICTED: protein ODORANT1-like
RefseqXP_009377339.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9LDR84e-96MY102_ARATH; Transcription factor MYB102
TrEMBLA0A498K5X20.0A0A498K5X2_MALDO; Uncharacterized protein
STRINGXP_009377334.10.0(Pyrus x bretschneideri)
STRINGXP_009377339.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.13e-83myb domain protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]