PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021356.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 485aa    MW: 52461.1 Da    PI: 6.4635
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021356.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31251309259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Pbr021356.1 251 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 309
                  699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.948245311IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-31247311IPR003657WRKY domain
SuperFamilySSF1182901.44E-26248311IPR003657WRKY domain
SMARTSM007746.8E-39250310IPR003657WRKY domain
PfamPF031064.0E-26252309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MPITRMANYQ GDLTDILRAG TTTANVGAYP SDHQEPQTDT WHFPSDHHMI FPSSSLAMEE  60
EEAKDNFGDP FSSYMRDPLI NELDISSSSL FSSPSCTARV EEGVTTTTFG GGGGHHVLSL  120
GHHNHQSGGI VVDGDPIKRP CNIFSQMLQI SPSAKVPMSP RDSPVIGGAV SSSPRGIKTS  180
PDSAAMVASD MIINGNSSSA ATGCLLGNTG MQISSPRNPG IKRRKSQAKK VVCIPAPAAA  240
NSRPTGEVVP SDLWAWRKYG QKPIKGSPFP RGYYRCSSSK GCPARKQVER SRTDPNMLVI  300
TYTSEHNHPW PTQRNALAGS TRSQPSKNGA AAALKVSPNS SHQPLQKATS PTKEEQNENM  360
NDDNHVCPTV ITAGSASTVK EEFEGIEKQL ELDLHHQHLG FAYRPSMPDE QSNQSHHPED  420
FFADLGEIEA DPLNLLFSQC FSADEQQQKA AKDAAPLDPF NLFDNWSGDH NTNNTSFGEA  480
KRQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-26225312280Disease resistance protein RRS1
5w3x_D7e-26225312280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353871.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A498IX330.0A0A498IX33_MALDO; Uncharacterized protein
STRINGXP_009353871.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.19e-87WRKY DNA-binding protein 35