PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021448.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 260aa    MW: 29882.8 Da    PI: 6.9091
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021448.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF786.8e-25959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +rienk+ rqvtf+kRr+g++KK +ELSvLCda++ + ifsstgk++ y+s
  Pbr021448.1  9 SRIENKTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLFIFSSTGKMFHYCS 59
                 59***********************************************96 PP
2K-box59.81.2e-2080169998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   +++++e+++ el k+++e++ L+ ++ ++ GedL+   +++L +Le+qLe s++k+R++K e+l +qi +l    k+ +een++L + +
  Pbr021448.1  80 PQHNDTEYMNAELGKMRRETHHLELSLQRYTGEDLSCVRFEDLVELEHQLEASVNKVRARKFEVLQQQIANLLATTKRREEENEKLFHLI 169
                  578899*****************************************************************************9997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.17161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-37160IPR002100Transcription factor, MADS-box
CDDcd002659.56E-39276No hitNo description
SuperFamilySSF554553.53E-28282IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014868.5E-1981166IPR002487Transcription factor, K-box
PROSITE profilePS5129713.18685175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRGKITISR IENKTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLFIFSS TGKMFHYCSE  60
ASSVEELIQR YQVAKGIRIP QHNDTEYMNA ELGKMRRETH HLELSLQRYT GEDLSCVRFE  120
DLVELEHQLE ASVNKVRARK FEVLQQQIAN LLATTKRREE ENEKLFHLIK AHRAAAFGHD  180
LQAHHEAHEQ LENLEMIPKS EEHRHVLDQF PFAGEEQPSS VLQLATLQPQ PQFNPYPHEP  240
AHHHPGLLDF NLSGPSIYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18171169MEF2C
5f28_B1e-18171169MEF2C
5f28_C1e-18171169MEF2C
5f28_D1e-18171169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021448.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353975.10.0PREDICTED: MADS-box protein FBP24-like
TrEMBLA0A498JUU11e-171A0A498JUU1_MALDO; Uncharacterized protein
STRINGXP_009353975.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.24e-56MIKC_MADS family protein