PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021534.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 472aa    MW: 51991.6 Da    PI: 5.1425
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021534.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-30252310259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+vers++dp+++++tY+g+H+h 
  Pbr021534.1 252 ADLWAWRKYGQKPIKGSPHPRNYYRCSTSkGCAARKHVERSTTDPNIFTVTYSGDHTHA 310
                  699***********************9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-30237312IPR003657WRKY domain
PROSITE profilePS5081132.719246312IPR003657WRKY domain
SuperFamilySSF1182901.96E-25248312IPR003657WRKY domain
SMARTSM007742.9E-35251311IPR003657WRKY domain
PfamPF031061.8E-25253309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MADDWDLYAV VRGCKSTAQI TTNTTITAAT TAIVPTTPIH TPSDEFADDS FWDLLISSDE  60
LTDPLFSFPD LDDPKDNDLQ EQQQSFIPNP TTTNNNKNNN PSTNNTTRGP NNIIPISPTI  120
SDFGGSSGSG QHHLQQHQQQ HHAQLQQQQL RQQQNQQHHL MPDHFTRGIP APAFRGIYGQ  180
QQPQMMQRGY QILQSQQPQN QQGFMRPGSM NPTYPLPRLP ITMPLHTPRS QRRRRTQQNK  240
KVCEVKAEDL TADLWAWRKY GQKPIKGSPH PRNYYRCSTS KGCAARKHVE RSTTDPNIFT  300
VTYSGDHTHA RPTHRNSLAG TSRNKKSAAS KNQKQPINND SGWAAVPNPS SPTTGQPLTV  360
QAEALANKVN SDNSLDKENE EFDDDDEEMD ETEYGDEDED DDVVIPDMDM SDEIFMGQKE  420
LGSTSSSGSG SSSLVGASGD NFSDNVQSSL GYSWTDANCS SAAGATVGGG C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-18240313680Disease resistance protein RRS1
5w3x_D1e-18240313680Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021534.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377624.10.0PREDICTED: probable WRKY transcription factor 27
RefseqXP_009377627.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A498KLJ60.0A0A498KLJ6_MALDO; Uncharacterized protein
STRINGXP_009377624.10.0(Pyrus x bretschneideri)
STRINGXP_009377627.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1888326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-43WRKY DNA-binding protein 27