PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr021637.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 262aa MW: 29722.6 Da PI: 10.1749

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr021637.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.5	1.3e-32	13	67	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt+eLH+rFveav++LGG+++AtPk il++m+v gLt++h+kSHLQkYR+ Pbr021637.1 13 KDRLRWTQELHDRFVEAVTKLGGPDRATPKGILKAMSVSGLTIYHIKSHLQKYRI 67 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.561	10	70	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-30	11	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.06E-18	12	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-26	13	68	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-9	15	66	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-8	99	138	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGSRRSESSA ANKDRLRWTQ ELHDRFVEAV TKLGGPDRAT PKGILKAMSV SGLTIYHIKS 60 HLQKYRISKF IPESTSKGKL QRKNITEMLP NFGTTSAAQL NEAFKIMQIQ LHRRLSDQHE 120 VQKNLKHKLE SQGRFLERYS AERHNTNKNR PIVITKPRKA PLSRTSLPSL CDDSEANAKD 180 FASESEPDRS ETQSSAEQFQ TLKKLRLHHH QNDPNVQFAL NSELYTAQSH SLLLPHEEDH 240 ISFPWNFAAC SSPLAVPSCF L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-22	13	70	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-22	13	70	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-22	13	70	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-22	13	70	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-22	13	70	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-22	13	70	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-22	13	70	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-22	13	70	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr021637.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008370148.1	0.0	myb family transcription factor PHL7-like
TrEMBL	A0A498K661	0.0	A0A498K661_MALDO; Uncharacterized protein
STRING	XP_008370148.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-48	G2-like family protein