PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr021741.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 253aa MW: 28802.1 Da PI: 5.2527

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr021741.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.2	3.6e-45	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppG+rF Pt+eel+++yL++k+egk++++ + i+ +d+y+ ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkatg+ v+s Pbr021741.1 4 LPPGYRFYPTEEELISFYLHNKLEGKQVDTRRLIPVMDVYSKEPWDLPKfsgeLCNGDREQWFFFTPRQQREAQGGRPNRTTASGYWKATGSPGYVYS 101 79**************************999***********656754445677********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++g+kkt+vfyk +ap+g+kt+W m+ yr+ Pbr021741.1 102 SDNKVIGVKKTMVFYKDKAPTGRKTKWKMNVYRA 135 ****************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-48	3	164	IPR003441	NAC domain
PROSITE profile	PS51005	47.612	4	165	IPR003441	NAC domain
Pfam	PF02365	2.5E-23	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEELPPGYRF YPTEEELISF YLHNKLEGKQ VDTRRLIPVM DVYSKEPWDL PKFSGELCNG 60 DREQWFFFTP RQQREAQGGR PNRTTASGYW KATGSPGYVY SSDNKVIGVK KTMVFYKDKA 120 PTGRKTKWKM NVYRAIEVDN LTSTSASTST PKLRDEFSLC RVYVVSGSAR AFDRRPLEPV 180 EAQQKFSNST EASTSSLKTT MVDKASSSDE TYSHSGELGD LLETSAGINS SNWEINEGFE 240 EPLWEWEQLN FL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-36	4	170	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-36	4	170	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-36	4	170	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-36	4	170	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-36	4	170	20	173	NAC domain-containing protein 19
3swm_B	4e-36	4	170	20	173	NAC domain-containing protein 19
3swm_C	4e-36	4	170	20	173	NAC domain-containing protein 19
3swm_D	4e-36	4	170	20	173	NAC domain-containing protein 19
3swp_A	4e-36	4	170	20	173	NAC domain-containing protein 19
3swp_B	4e-36	4	170	20	173	NAC domain-containing protein 19
3swp_C	4e-36	4	170	20	173	NAC domain-containing protein 19
3swp_D	4e-36	4	170	20	173	NAC domain-containing protein 19
4dul_A	3e-36	4	170	17	170	NAC domain-containing protein 19
4dul_B	3e-36	4	170	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr021741.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009377822.1	0.0	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	5e-89	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A498KBV7	1e-177	A0A498KBV7_MALDO; Uncharacterized protein
STRING	XP_009377821.1	1e-178	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-91	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]