PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr021935.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 239aa MW: 26574.8 Da PI: 9.5649

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr021935.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.3	1.4e-32	159	217	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Pbr021935.1 159 LDDGYKWRKYGQKVVKNTQHPRSYYRCTMDNCRVKKRVERLAEDPRMVITTYEGRHVHS 217 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-33	144	217	IPR003657	WRKY domain
SuperFamily	SSF118290	1.14E-28	152	218	IPR003657	WRKY domain
PROSITE profile	PS50811	29.126	154	219	IPR003657	WRKY domain
SMART	SM00774	4.0E-37	159	218	IPR003657	WRKY domain
Pfam	PF03106	3.0E-25	160	216	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1901141	Biological Process	regulation of lignin biosynthetic process
GO:1904369	Biological Process	positive regulation of sclerenchyma cell differentiation
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MDFFPFPQNL TFSSLPLVGH QSLKGGLSTA SIASDDAPST TTLSETLVPR PSLTPPLRHK 60 QDHNITTSSE FGGGGGGGGG GGPHGHLLSL QRSTANLWAW GDVSDEYCLN SKRSSGGDDS 120 HHPYLGGLSA MKMKKMKAIR RKVREPRFCF KTLSDVDVLD DGYKWRKYGQ KVVKNTQHPR 180 SYYRCTMDNC RVKKRVERLA EDPRMVITTY EGRHVHSPSH DLDDQDSRSP SHLNNFFW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	150	216	8	74	Probable WRKY transcription factor 4
2lex_A	6e-26	150	216	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr021935.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354059.1	1e-179	PREDICTED: probable WRKY transcription factor 13
Refseq	XP_009354060.1	1e-179	PREDICTED: probable WRKY transcription factor 13
TrEMBL	A0A498HYP5	1e-164	A0A498HYP5_MALDO; Uncharacterized protein
STRING	XP_009354059.1	1e-178	(Pyrus x bretschneideri)
STRING	XP_009354060.1	1e-178	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4079	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	2e-57	WRKY DNA-binding protein 13