PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr021980.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 225aa MW: 24380.6 Da PI: 7.8146

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr021980.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.2	1.5e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e Pbr021980.1 2 SCNGCRVLRKGCSDTCILRSCLywidsPEAQGNATLFLAKFFGRSDLLSFVSAVPENQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQSAVE 99 6***********************************************************************************************99 PP DUF260 94 lal 96 ++l Pbr021980.1 100 TVL 102 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.946	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSCNGCRVLR KGCSDTCILR SCLYWIDSPE AQGNATLFLA KFFGRSDLLS FVSAVPENQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQSAVET VLCGGALRPL QAFTTPTLDE 120 SSDSFSRGSC TPKNRYCPSA SAYYDAERIQ PFEAAGLSLK PNLVAAERGR GRGMWICVSA 180 AMDQRRRDTV SFDSEESVMT TTTTRTFESG GGDLKDRKLL NLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr021980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354105.1	1e-165	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	3e-61	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A498J9U7	1e-150	A0A498J9U7_MALDO; Uncharacterized protein
STRING	XP_009354105.1	1e-164	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	3e-63	LOB domain-containing protein 39

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]