PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022222.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bZIP
Protein Properties Length: 203aa    MW: 23280.7 Da    PI: 6.084
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022222.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1475.5e-1587140558
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                  +++rr+ +NRe+ArrsR RK++ ++eL   v  L +eN++L ++l++ ++  +k
  Pbr022222.1  87 RKQRRMLSNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSESHDK 140
                  689******************************************999887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-1483147IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7685148IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-1387137No hitNo description
PfamPF001707.7E-1387140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.4E-1287160No hitNo description
CDDcd147021.54E-1888139No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MQPGEATGLH YLAPLSSSSP YPPHFSMSTQ SNATAFQFNR FSSPLYNFQF PNSQLLEINN  60
NPQQPSSFSS STSDEADEQQ LSLINERKQR RMLSNRESAR RSRMRKQKHL DELWSQVVWL  120
RNENHQLVDK LNHVSESHDK VLEENAQLKE EASELRQMVN DLQLHSPYHS FLRDLEDVPC  180
NTAYLRTESS NPSITSSMDL LG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199106RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022222.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378305.11e-147PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC23e-44BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A498J7F11e-126A0A498J7F1_MALDO; Uncharacterized protein
STRINGXP_009378305.11e-146(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.16e-51basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]