PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022361.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family DBB
Protein Properties Length: 209aa    MW: 22958.9 Da    PI: 6.2914
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022361.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.79.7e-08433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++lfC  ++  lC++C ++ H
  Pbr022361.1  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                 7**************************999 PP
2zf-B_box26.61.2e-085291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Pbr022361.1 52 DVPCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                 5789**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.125147IPR000315B-box-type zinc finger
CDDcd000214.39E-6333No hitNo description
PfamPF006434.3E-6342IPR000315B-box-type zinc finger
SMARTSM003362.2E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501198.7455196IPR000315B-box-type zinc finger
PfamPF006431.1E-65285IPR000315B-box-type zinc finger
CDDcd000211.25E-65684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAN RHVRVGIATP SDVPCCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGNKLGH SEELGLQPLD  120
QKKVQRDQNQ LPDLKTGENQ HNHNVSPTAV LDNNIDGDYK MDNTPIDLNT RPQRIHGQAS  180
TNQEQGVGVL NGVNDESASV VPVRSFRK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022361.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378437.11e-154PREDICTED: B-box zinc finger protein 18-like isoform X1
RefseqXP_009378438.11e-154PREDICTED: B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM56e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A498IYJ91e-138A0A498IYJ9_MALDO; Uncharacterized protein
STRINGXP_009378437.11e-154(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-78DBB family protein