PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022371.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family BBR-BPC
Protein Properties Length: 312aa    MW: 34916.5 Da    PI: 10.0651
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022371.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind361.12.2e-11013111301
    GAGA_bind   1 mdddgsre..rnkg.yye...............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 
                  mdd  ++e  r+k  yy+               ++ ++l   +++++ms+ia+rda+irern+al+ek++a+a+rd+a+ qrd+ala+r+ al+erdn
  Pbr022371.1   1 MDDGRQHEngRHKMdYYRggvaspwnmmtqqqaKEpNALV--MNKKIMSIIADRDAAIRERNAALAEKNEALAARDEALRQRDEALAQRDSALMERDN 96 
                  6776665558999889999999999999987653345666..99****************************************************** PP

    GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskk 176
                  +++al  ++n+   + p g ++ +g+k ++     +   l+d  + +++ +++ea+pi+   +ea +++++k+    k++k+++ak + kk +e+ ++
  Pbr022371.1  97 AYAALHSRDNA--VNFPLGGGAQRGSKRVQRPSI-HSVTLADVHYSTKDVNITEAYPISVISPEAVKSRQTKRA---KENKASRAKqSRKKVGEDLNR 188
                  *******9998..5678899999*******7776.889***************************999999944...444444444133444667777 PP

    GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                  + ++++   + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR++grKmS+++f++lL++Laa
  Pbr022371.1 189 QASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGIPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAA 284
                  766666..57**************************************************************************************** PP

    GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                  +G+dls p+DLk++WA+HGtn+++ti+
  Pbr022371.1 285 DGHDLSIPLDLKEYWARHGTNRYITIK 311
                  **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-1401311IPR010409GAGA-binding transcriptional activator
PfamPF062176.6E-1001311IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDDGRQHENG RHKMDYYRGG VASPWNMMTQ QQAKEPNALV MNKKIMSIIA DRDAAIRERN  60
AALAEKNEAL AARDEALRQR DEALAQRDSA LMERDNAYAA LHSRDNAVNF PLGGGAQRGS  120
KRVQRPSIHS VTLADVHYST KDVNITEAYP ISVISPEAVK SRQTKRAKEN KASRAKQSRK  180
KVGEDLNRQA SSDGIKYKSE WDTHDLGLNL VSFDESTMPV PVCSCTGIPR QCYKWGNGGW  240
QSSCCTTHMS MYPLPQMPNK RHARMGGRKM SGSVFTRLLS RLAADGHDLS IPLDLKEYWA  300
RHGTNRYITI K*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378460.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X2
RefseqXP_009378461.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X3
RefseqXP_009378462.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X3
RefseqXP_009378463.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X3
SwissprotQ8S8C61e-133BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A498JUJ20.0A0A498JUJ2_MALDO; Uncharacterized protein
STRINGXP_009378459.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-126basic pentacysteine 4