PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022387.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 105aa    MW: 11836.3 Da    PI: 9.7113
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022387.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-091458344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++ ++   +W  +a+ +g ++t++++k ++
      Pbr022387.1 14 SWTPKQNKLFEKALALYDKEtpeRWQNVAKAVGGNKTAEEVKKHY 58
                     7******************9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-4762IPR009057Homeodomain-like
PROSITE profilePS500906.771762IPR017877Myb-like domain
SMARTSM007178.2E-81164IPR001005SANT/Myb domain
SuperFamilySSF466896.4E-121370IPR009057Homeodomain-like
CDDcd001671.07E-41458No hitNo description
PfamPF002494.1E-71458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MASSSLRKHN SSSSWTPKQN KLFEKALALY DKETPERWQN VAKAVGGNKT AEEVKKHYDI  60
LLEDLRQIES GRVPIPNYKS SIGSSTSSIN VDEEERLLKY LKLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-301104193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378514.15e-71PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P6PP978e-53A0A2P6PP97_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_009378514.12e-70(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-34RAD-like 6